************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 601139
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holygiribet05.rc.fas.harvard.edu (AVX, FMA3, 251 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 32 -st AA -ninit 10 -bb 1500 -pre 69taxa -msub nuclear -s ../../matrices/Concatenated_69taxa/69taxa_concatenated.phy -m MFP -mset WAG,LG -madd LG4M,LG4X,LG+C10,LG+C20 -mrate G,R,E -rcluster 10 -mwopt
Seed:    601139 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Fri Dec  3 18:29:34 2021
Kernel:  AVX+FMA - 32 threads (64 CPU cores detected)

Reading alignment file ../../matrices/Concatenated_69taxa/69taxa_concatenated.phy ... Phylip format detected
Alignment most likely contains protein sequences
WARNING: 41157 sites contain only gaps or ambiguous characters.
Alignment has 114 sequences with 316814 columns and 217122 patterns (129358 informative sites, 147063 constant sites)
                                                              Gap/Ambiguity  Composition  p-value
   1  Californiulus_sp                                               54.75%    failed      0.00%
   2  Uroblaniulus_sp                                                52.75%    failed      0.00%
   3  Anadenobolus_sp                                                49.65%    failed      0.00%
   4  Tygarrup_javanicus                                             58.42%    failed      0.00%
   5  Tylobolus                                                      59.82%    failed      0.00%
   6  Orinisobates_nigrior                                           55.02%    failed      0.00%
   7  Onomeris_sp                                                    58.93%    failed      0.00%
   8  Callipus_foetidissimus_SRR3485975                              67.02%    failed      0.00%
   9  Strigamia_maritima_2                                           63.01%    failed      0.00%
  10  Ommatoiulus_sabulosus_SRR1653222                               54.44%    failed      0.00%
  11  Strigamia_maritima_1                                           54.96%    failed      0.00%
  12  Thrinaxoria_sp_M1                                              52.48%    failed      0.00%
  13  Lithobius_sp                                                   49.88%    failed      0.00%
  14  Eupolybothrus_tridentinus_SRR3485982                           53.64%    failed      0.00%
  15  Hanseniella                                                    55.01%    failed      0.00%
  16  Glomeridella_minima_SRR3485983                                 55.95%    failed      0.00%
  17  Alipes_grandidieri                                             55.80%    failed      0.00%
  18  Symphyla_japan                                                 69.15%    failed      0.00%
  19  Craterostigmus_tasmanianus_SRR2774008                          51.91%    failed      0.00%
  20  Theatops_spinicaudus                                           63.59%    failed      0.00%
  21  Polyxenidae_sp_2438_JEB_0005                                   65.77%    failed      0.00%
  22  Clinopodes_flavidus_SRR1653181                                 50.84%    failed      0.00%
  23  Himantarium_gabrielis_SRR1653198                               51.91%    failed      0.00%
  24  Hydroschendyla_submarina                                       66.11%    failed      0.00%
  25  Abacion_sp_MITS007                                             57.01%    failed      0.00%
  26  Anoplodactylus_insignis_IZ_134527_isoSingle                    62.53%    failed      0.00%
  27  Scolopendropsis_bahiensis                                      57.78%    failed      0.00%
  28  Rhinotus_purpureus                                             53.02%    failed      0.00%
  29  Haploglomeris_multistriata_SRR3485985                          55.90%    failed      0.00%
  30  Cyrtodesmus_sp                                                 56.12%    failed      0.00%
  31  Anopsobius_giribeti                                            56.86%    failed      0.00%
  32  Striaria_sp_MITS013                                            49.07%    failed      0.00%
  33  Craspedosoma_sp_AD2016_SRR3485977                              47.12%    failed      0.00%
  34  Artemia_salina_MCZ_IZ_141349_Crust208_TransD_Iso_Single        62.59%    failed      0.00%
  35  Scolopocryptops_sexspinosus                                    64.67%    failed      0.00%
  36  Strigamia_acuminata_SRR3485997                                 51.89%    failed      0.00%
  37  Schendyla_carniolensis_SRR3485996                              50.06%    failed      0.00%
  38  Cryptops_hortensis                                             51.72%    failed      0.00%
  39  Pseudopolydesmus_sp                                            57.89%    failed      0.00%
  40  Hanseniella_nivea_SRR3485984                                   49.35%    failed      0.00%
  41  Cleidogona_sp                                                  53.11%    failed      0.00%
  42  Henia_illyrica_SRR3485986                                      51.55%    failed      0.00%
  43  Pauropus_huxleyi                                               63.62%    failed      0.00%
  44  Sigmoria_latior_munda                                          66.63%    failed      0.00%
  45  Scutigera_coleoptrata_SRR1653237                               48.26%    failed      0.00%
  46  Eupolybothrus_cavernicolus_ERR338470                           48.08%    failed      0.00%
  47  Glomeris_marginata                                             68.14%    failed      0.00%
  48  Scolopendra_cingulata_SRR1653235                               49.95%    failed      0.00%
  49  Mecistocephalus_guildingii                                     56.22%    failed      0.00%
  50  Orthoporus_sp_2                                                61.99%    failed      0.00%
  51  Orthoporus_sp_1                                                68.61%    failed      0.00%
  52  Polyxenus_lagurus_SRR3485994                                   55.14%    failed      0.00%
  53  Xystodesmidae_sp_AUMS5334                                      55.47%    failed      0.00%
  54  Henia_brevis                                                   57.86%    failed      0.00%
  55  Craterostigmus_crabilli                                        68.17%    failed      0.00%
  56  Glomeridesmus_sp_1                                             54.13%    failed      0.00%
  57  Cylindroiulus_punctatus                                        61.10%    failed      0.00%
  58  Glomeridesmus_sp_2                                             51.30%    failed      0.00%
  59  Symphylella_sp_AD2014_SRR1653241                               50.97%    failed      0.00%
  60  Acopauropus_ornatus_SRR3485973                                 53.96%    failed      0.00%
  61  Polyzonium_germanicum_SRR3485995                               55.08%    failed      0.00%
  62  Eudigraphis_taiwanensis                                        59.72%    failed      0.00%
  63  Scoterpes_sp_AUMS15047                                         50.53%    failed      0.00%
  64  Scolopocryptops_rubiginosus_SRR1653236                         49.76%    failed      0.00%
  65  Newportia_adisi                                                59.88%    failed      0.00%
  66  Cambala_annulata                                               57.37%    failed      0.00%
  67  Limulus_polyphemus_isoSingle                                   60.41%    failed      0.00%
  68  Platydesmus_sp                                                 50.65%    failed      0.00%
  69  Centruroides_sculpturatus_IZ_46910_isoSingle                   57.06%    failed      0.00%
  70  Scutigera_coleoptrata                                          67.33%    failed      0.00%
  71  Hanseniella_sp_AD2014_SRR1653195                               56.05%    failed      0.00%
  72  Andrognathus_corticarius                                       56.34%    failed      0.00%
  73  Prostemmiulus_loomisi                                          69.86%    failed      0.00%
  74  Stenotaenia_linearis                                           58.71%    failed      0.00%
  75  Brachycybe_lecontii                                            49.40%    failed      0.00%
  76  Scolopendra_subspinipes_SRR6377863                             48.60%    failed      0.00%
  77  Scutigerina_weberi                                             61.34%    failed      0.00%
  78  Polydesmus_complanatus_SRR3485993                              50.06%    failed      0.00%
  79  Notiphilides_grandis                                           59.97%    failed      0.00%
  80  Cryptops_anomalans_SRR3485978                                  51.49%    failed      0.00%
  81  Sphaerotheriidae_sp                                            82.52%    failed      0.00%
  82  Folsomia_isoSingle                                             59.32%    failed      0.00%
  83  Petaserpes_sp                                                  69.75%    failed      0.00%
  84  Desmonus_earlei_MITS016                                        54.10%    failed      0.00%
  85  Craterostigmus_tasmanianus                                     65.18%    failed      0.00%
  86  Calanus_finmarchicus_MCZ_IZ_60621_Crust123_TransD_Iso_Single   66.75%    failed      0.00%
  87  Floridobolus_sp                                                69.29%    failed      0.00%
  88  Rhysida_longipes                                               64.67%    failed      0.00%
  89  Siphonoconus                                                   58.66%    failed      0.00%
  90  Abacion_magnum                                                 63.38%    failed      0.00%
  91  Idotea_baltica_MCZ_IZ_71215                                    69.07%    failed      0.00%
  92  Paralamyctes_validus                                           65.80%    failed      0.00%
  93  Eudigraphis_takakuwai_SRR1653191                               53.37%    failed      0.00%
  94  Eupolybothrus_fasciatus_SRR3485981                             63.45%    failed      0.00%
  95  Narceus_americanus                                             64.25%    failed      0.00%
  96  Lithobius_atkinsoni                                            78.77%    failed      0.00%
  97  Asiomorpha_coarctata                                           68.94%    failed      0.00%
  98  Akymnopellis_chilensis                                         78.81%    failed      0.00%
  99  Polydesmus_angustus                                            82.37%    failed      0.00%
 100  Himantarium_gabrielis                                          69.80%    failed      0.00%
 101  Microspirobolus_sp                                             83.70%    failed      0.00%
 102  Sphendononema_guildingii                                       72.14%    failed      0.00%
 103  Pseudocellus_sp_iz140060                                       89.39%    failed      0.00%
 104  Neogovea_matawai_MCZ133922                                     76.58%    failed      0.00%
 105  Cyliosoma                                                      94.71%    failed      0.00%
 106  Mimops_orientalis_2_WG05102                                    79.54%    failed      0.00%
 107  Scutigerella                                                   85.40%    failed      0.00%
 108  Chondromorpha_cairoensis                                       95.67%    failed      0.00%
 109  Prostemmiulus_sp                                               82.29%    failed      0.00%
 110  Siphonophorus_sp_1                                             97.52%    failed      0.00%
 111  Xibalbanus_tulumensis                                          97.07%    failed      0.00%
 112  Mimops_orientalis_2_WG05101                                    93.42%    failed      0.00%
 113  Trichomorpha_sp                                                94.88%    failed      0.00%
 114  Thalassisobates_littoralis_SRR1653242                          92.95%    failed      0.00%
WARNING: 103 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                                          62.38%  114 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000315643 for long alignment

Create initial parsimony tree by phylogenetic likelihood library (PLL)... 33.295 seconds

NOTE: ModelFinder requires 39486 MB RAM!
ModelFinder will test 48 protein models (sample size: 316814) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  WAG+G4        7297127.515  226 14594707.029 14594707.353 14597117.561
  2  WAG+R2        7389042.005  227 14778538.009 14778538.336 14780959.207
  3  WAG+R3        7300985.745  229 14602429.490 14602429.822 14604872.020
  4  WAG+R4        7281921.971  231 14564305.942 14564306.281 14566769.805
  5  WAG+R5        7277210.495  233 14554886.990 14554887.334 14557372.184
  6  WAG+R6        7276361.064  235 14553192.128 14553192.478 14555698.654
  7  WAG+R7        7276099.388  237 14552672.776 14552673.132 14555200.634

******************************************************
CHECKPOINT: Resuming analysis from 69taxa.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 284850
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holy7c26405.rc.fas.harvard.edu (AVX512, FMA3, 503 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 64 -st AA -ninit 10 -bb 1500 -pre 69taxa -msub nuclear -s ../../matrices/Concatenated_69taxa/69taxa_concatenated.phy -m MFP -mset LG,WAG -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20 -mrate G,R,E -mwopt
Seed:    601139 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Sat Dec  4 09:12:01 2021
Kernel:  AVX+FMA - 64 threads (64 CPU cores detected)

WARNING: Command-line argument `64` differs from checkpoint `32`
WARNING: Command-line argument `LG,WAG` differs from checkpoint `WAG,LG`
WARNING: Command-line argument `-rcluster` differs from checkpoint `-madd`
WARNING: Command-line argument `10` differs from checkpoint `LG4M,LG4X,LG+C10,LG+C20`
WARNING: Command-line argument `-madd` differs from checkpoint `-mrate`
WARNING: Command-line argument `LG4M,LG4X,LG+C10,LG+C20` differs from checkpoint `G,R,E`
WARNING: Command-line argument `-mrate` differs from checkpoint `-rcluster`
WARNING: Command-line argument `G,R,E` differs from checkpoint `10`
WARNING: Command-line differs from checkpoint!
Reading alignment file ../../matrices/Concatenated_69taxa/69taxa_concatenated.phy ... Phylip format detected
Alignment most likely contains protein sequences
WARNING: 41157 sites contain only gaps or ambiguous characters.
Alignment has 114 sequences with 316814 columns and 217122 patterns (129358 informative sites, 147063 constant sites)
                                                              Gap/Ambiguity  Composition  p-value
   1  Californiulus_sp                                               54.75%    failed      0.00%
   2  Uroblaniulus_sp                                                52.75%    failed      0.00%
   3  Anadenobolus_sp                                                49.65%    failed      0.00%
   4  Tygarrup_javanicus                                             58.42%    failed      0.00%
   5  Tylobolus                                                      59.82%    failed      0.00%
   6  Orinisobates_nigrior                                           55.02%    failed      0.00%
   7  Onomeris_sp                                                    58.93%    failed      0.00%
   8  Callipus_foetidissimus_SRR3485975                              67.02%    failed      0.00%
   9  Strigamia_maritima_2                                           63.01%    failed      0.00%
  10  Ommatoiulus_sabulosus_SRR1653222                               54.44%    failed      0.00%
  11  Strigamia_maritima_1                                           54.96%    failed      0.00%
  12  Thrinaxoria_sp_M1                                              52.48%    failed      0.00%
  13  Lithobius_sp                                                   49.88%    failed      0.00%
  14  Eupolybothrus_tridentinus_SRR3485982                           53.64%    failed      0.00%
  15  Hanseniella                                                    55.01%    failed      0.00%
  16  Glomeridella_minima_SRR3485983                                 55.95%    failed      0.00%
  17  Alipes_grandidieri                                             55.80%    failed      0.00%
  18  Symphyla_japan                                                 69.15%    failed      0.00%
  19  Craterostigmus_tasmanianus_SRR2774008                          51.91%    failed      0.00%
  20  Theatops_spinicaudus                                           63.59%    failed      0.00%
  21  Polyxenidae_sp_2438_JEB_0005                                   65.77%    failed      0.00%
  22  Clinopodes_flavidus_SRR1653181                                 50.84%    failed      0.00%
  23  Himantarium_gabrielis_SRR1653198                               51.91%    failed      0.00%
  24  Hydroschendyla_submarina                                       66.11%    failed      0.00%
  25  Abacion_sp_MITS007                                             57.01%    failed      0.00%
  26  Anoplodactylus_insignis_IZ_134527_isoSingle                    62.53%    failed      0.00%
  27  Scolopendropsis_bahiensis                                      57.78%    failed      0.00%
  28  Rhinotus_purpureus                                             53.02%    failed      0.00%
  29  Haploglomeris_multistriata_SRR3485985                          55.90%    failed      0.00%
  30  Cyrtodesmus_sp                                                 56.12%    failed      0.00%
  31  Anopsobius_giribeti                                            56.86%    failed      0.00%
  32  Striaria_sp_MITS013                                            49.07%    failed      0.00%
  33  Craspedosoma_sp_AD2016_SRR3485977                              47.12%    failed      0.00%
  34  Artemia_salina_MCZ_IZ_141349_Crust208_TransD_Iso_Single        62.59%    failed      0.00%
  35  Scolopocryptops_sexspinosus                                    64.67%    failed      0.00%
  36  Strigamia_acuminata_SRR3485997                                 51.89%    failed      0.00%
  37  Schendyla_carniolensis_SRR3485996                              50.06%    failed      0.00%
  38  Cryptops_hortensis                                             51.72%    failed      0.00%
  39  Pseudopolydesmus_sp                                            57.89%    failed      0.00%
  40  Hanseniella_nivea_SRR3485984                                   49.35%    failed      0.00%
  41  Cleidogona_sp                                                  53.11%    failed      0.00%
  42  Henia_illyrica_SRR3485986                                      51.55%    failed      0.00%
  43  Pauropus_huxleyi                                               63.62%    failed      0.00%
  44  Sigmoria_latior_munda                                          66.63%    failed      0.00%
  45  Scutigera_coleoptrata_SRR1653237                               48.26%    failed      0.00%
  46  Eupolybothrus_cavernicolus_ERR338470                           48.08%    failed      0.00%
  47  Glomeris_marginata                                             68.14%    failed      0.00%
  48  Scolopendra_cingulata_SRR1653235                               49.95%    failed      0.00%
  49  Mecistocephalus_guildingii                                     56.22%    failed      0.00%
  50  Orthoporus_sp_2                                                61.99%    failed      0.00%
  51  Orthoporus_sp_1                                                68.61%    failed      0.00%
  52  Polyxenus_lagurus_SRR3485994                                   55.14%    failed      0.00%
  53  Xystodesmidae_sp_AUMS5334                                      55.47%    failed      0.00%
  54  Henia_brevis                                                   57.86%    failed      0.00%
  55  Craterostigmus_crabilli                                        68.17%    failed      0.00%
  56  Glomeridesmus_sp_1                                             54.13%    failed      0.00%
  57  Cylindroiulus_punctatus                                        61.10%    failed      0.00%
  58  Glomeridesmus_sp_2                                             51.30%    failed      0.00%
  59  Symphylella_sp_AD2014_SRR1653241                               50.97%    failed      0.00%
  60  Acopauropus_ornatus_SRR3485973                                 53.96%    failed      0.00%
  61  Polyzonium_germanicum_SRR3485995                               55.08%    failed      0.00%
  62  Eudigraphis_taiwanensis                                        59.72%    failed      0.00%
  63  Scoterpes_sp_AUMS15047                                         50.53%    failed      0.00%
  64  Scolopocryptops_rubiginosus_SRR1653236                         49.76%    failed      0.00%
  65  Newportia_adisi                                                59.88%    failed      0.00%
  66  Cambala_annulata                                               57.37%    failed      0.00%
  67  Limulus_polyphemus_isoSingle                                   60.41%    failed      0.00%
  68  Platydesmus_sp                                                 50.65%    failed      0.00%
  69  Centruroides_sculpturatus_IZ_46910_isoSingle                   57.06%    failed      0.00%
  70  Scutigera_coleoptrata                                          67.33%    failed      0.00%
  71  Hanseniella_sp_AD2014_SRR1653195                               56.05%    failed      0.00%
  72  Andrognathus_corticarius                                       56.34%    failed      0.00%
  73  Prostemmiulus_loomisi                                          69.86%    failed      0.00%
  74  Stenotaenia_linearis                                           58.71%    failed      0.00%
  75  Brachycybe_lecontii                                            49.40%    failed      0.00%
  76  Scolopendra_subspinipes_SRR6377863                             48.60%    failed      0.00%
  77  Scutigerina_weberi                                             61.34%    failed      0.00%
  78  Polydesmus_complanatus_SRR3485993                              50.06%    failed      0.00%
  79  Notiphilides_grandis                                           59.97%    failed      0.00%
  80  Cryptops_anomalans_SRR3485978                                  51.49%    failed      0.00%
  81  Sphaerotheriidae_sp                                            82.52%    failed      0.00%
  82  Folsomia_isoSingle                                             59.32%    failed      0.00%
  83  Petaserpes_sp                                                  69.75%    failed      0.00%
  84  Desmonus_earlei_MITS016                                        54.10%    failed      0.00%
  85  Craterostigmus_tasmanianus                                     65.18%    failed      0.00%
  86  Calanus_finmarchicus_MCZ_IZ_60621_Crust123_TransD_Iso_Single   66.75%    failed      0.00%
  87  Floridobolus_sp                                                69.29%    failed      0.00%
  88  Rhysida_longipes                                               64.67%    failed      0.00%
  89  Siphonoconus                                                   58.66%    failed      0.00%
  90  Abacion_magnum                                                 63.38%    failed      0.00%
  91  Idotea_baltica_MCZ_IZ_71215                                    69.07%    failed      0.00%
  92  Paralamyctes_validus                                           65.80%    failed      0.00%
  93  Eudigraphis_takakuwai_SRR1653191                               53.37%    failed      0.00%
  94  Eupolybothrus_fasciatus_SRR3485981                             63.45%    failed      0.00%
  95  Narceus_americanus                                             64.25%    failed      0.00%
  96  Lithobius_atkinsoni                                            78.77%    failed      0.00%
  97  Asiomorpha_coarctata                                           68.94%    failed      0.00%
  98  Akymnopellis_chilensis                                         78.81%    failed      0.00%
  99  Polydesmus_angustus                                            82.37%    failed      0.00%
 100  Himantarium_gabrielis                                          69.80%    failed      0.00%
 101  Microspirobolus_sp                                             83.70%    failed      0.00%
 102  Sphendononema_guildingii                                       72.14%    failed      0.00%
 103  Pseudocellus_sp_iz140060                                       89.39%    failed      0.00%
 104  Neogovea_matawai_MCZ133922                                     76.58%    failed      0.00%
 105  Cyliosoma                                                      94.71%    failed      0.00%
 106  Mimops_orientalis_2_WG05102                                    79.54%    failed      0.00%
 107  Scutigerella                                                   85.40%    failed      0.00%
 108  Chondromorpha_cairoensis                                       95.67%    failed      0.00%
 109  Prostemmiulus_sp                                               82.29%    failed      0.00%
 110  Siphonophorus_sp_1                                             97.52%    failed      0.00%
 111  Xibalbanus_tulumensis                                          97.07%    failed      0.00%
 112  Mimops_orientalis_2_WG05101                                    93.42%    failed      0.00%
 113  Trichomorpha_sp                                                94.88%    failed      0.00%
 114  Thalassisobates_littoralis_SRR1653242                          92.95%    failed      0.00%
WARNING: 103 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                                          62.38%  114 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000315643 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 69taxa.model
NOTE: ModelFinder requires 39486 MB RAM!
ModelFinder will test 48 protein models (sample size: 316814) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  LG+G4         7318992.076  226 14638436.153 14638436.477 14640846.685
  2  LG+R2         7419607.316  227 14839668.632 14839668.959 14842089.829
  3  LG+R3         7324334.950  229 14649127.899 14649128.232 14651570.429
  4  LG+R4         7303460.024  231 14607382.048 14607382.387 14609845.910
  5  LG+R5         7298398.844  233 14597263.687 14597264.032 14599748.882
  6  LG+R6         7297387.576  235 14595245.152 14595245.502 14597751.678
  7  LG+R7         7297135.847  237 14594745.694 14594746.050 14597273.553
  8  LG+R8         7297117.140  239 14594712.279 14594712.642 14597261.470
  9  LG+R9         7297112.960  241 14594707.919 14594708.288 14597278.442
 10  LG+R10        Skipped 
 11  LG            8096696.301  225 16193842.603 16193842.924 16196242.469
 12  LG+F+G4       6716953.262  245 13434396.523 13434396.904 13437009.711
 13  LG+F+R2       6825719.683  246 13651931.366 13651931.750 13654555.220
 14  LG+F+R3       6727034.700  248 13454565.399 13454565.789 13457210.585
 15  LG+F+R4       6703360.749  250 13407221.497 13407221.894 13409888.015
 16  LG+F+R5       6696817.282  252 13394138.564 13394138.967 13396826.414
 17  LG+F+R6       6695149.365  254 13390806.730 13390807.139 13393515.912
 18  LG+F+R7       6694612.424  256 13389736.848 13389737.263 13392467.361
 19  LG+F+R8       6694483.806  258 13389483.612 13389484.035 13392235.458
 20  LG+F+R9       6694468.285  260 13389456.570 13389456.999 13392229.749
 21  LG+F+R10      6694455.554  262 13389435.108 13389435.543 13392229.618
 22  LG+F          7470305.282  244 14941098.564 14941098.941 14943701.085
 23  WAG+G4        7297127.515  226 14594707.029 14594707.353 14597117.561
 24  WAG+R2        7389042.005  227 14778538.009 14778538.336 14780959.207
 25  WAG+R3        7300985.745  229 14602429.490 14602429.822 14604872.020
 26  WAG+R4        7281921.971  231 14564305.942 14564306.281 14566769.805
 27  WAG+R5        7277210.495  233 14554886.990 14554887.334 14557372.184
 28  WAG+R6        7276361.064  235 14553192.128 14553192.478 14555698.654
 29  WAG+R7        7276099.388  237 14552672.776 14552673.132 14555200.634
 30  WAG+R8        7276070.361  239 14552618.723 14552619.085 14555167.914
 31  WAG+R9        7276066.049  241 14552614.098 14552614.466 14555184.621
 32  WAG+R10       Skipped 
 33  WAG           8032787.386  225 16066024.772 16066025.093 16068424.638
 34  WAG+F+G4      6747898.270  245 13496286.540 13496286.921 13498899.728
 35  WAG+F+R2      6847327.733  246 13695147.467 13695147.851 13697771.320
 36  WAG+F+R3      6755443.450  248 13511382.900 13511383.290 13514028.085
 37  WAG+F+R4      6733842.285  250 13468184.570 13468184.966 13470851.087
 38  WAG+F+R5      6727782.073  252 13456068.145 13456068.548 13458755.995
 39  WAG+F+R6      6726446.281  254 13453400.562 13453400.971 13456109.744
 40  WAG+F+R7      6725987.898  256 13452487.796 13452488.211 13455218.310
 41  WAG+F+R8      6725904.110  258 13452324.221 13452324.643 13455076.067
 42  WAG+F+R9      6725889.783  260 13452299.566 13452299.995 13455072.744
 43  WAG+F+R10     6725882.404  262 13452288.808 13452289.243 13455083.318
 44  WAG+F         7474804.597  244 14950097.193 14950097.571 14952699.715
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
 45  LG4M          7318879.581  226 14638211.162 14638211.486 14640621.694
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
 46  LG4X          7279098.927  231 14558659.854 14558660.192 14561123.716
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
 47  LG+C10        7079578.930  235 14159627.861 14159628.211 14162134.387
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
 48  LG+C20        7032076.298  245 14064642.596 14064642.977 14067255.783
Akaike Information Criterion:           LG+F+R10
Corrected Akaike Information Criterion: LG+F+R10
Bayesian Information Criterion:         LG+F+R10
Best-fit model: LG+F+R10 chosen according to BIC

All model information printed to 69taxa.model
CPU time for ModelFinder: 1670323.247 seconds (463h:58m:43s)
Wall-clock time for ModelFinder: 29102.692 seconds (8h:5m:2s)
Generating 1500 samples for ultrafast bootstrap (seed: 601139)...

NOTE: 39486 MB RAM (38 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -6746973.335
2. Current log-likelihood: -6695950.413
3. Current log-likelihood: -6695079.422
4. Current log-likelihood: -6694906.158
5. Current log-likelihood: -6694817.835
6. Current log-likelihood: -6694759.878
7. Current log-likelihood: -6694716.246
8. Current log-likelihood: -6694681.182
9. Current log-likelihood: -6694651.006
10. Current log-likelihood: -6694625.996
11. Current log-likelihood: -6694605.256
12. Current log-likelihood: -6694588.024
13. Current log-likelihood: -6694573.791
14. Current log-likelihood: -6694562.113
15. Current log-likelihood: -6694552.919
16. Current log-likelihood: -6694545.543
17. Current log-likelihood: -6694539.624
18. Current log-likelihood: -6694535.132
19. Current log-likelihood: -6694531.566
20. Current log-likelihood: -6694528.661
21. Current log-likelihood: -6694526.057
22. Current log-likelihood: -6694523.591
23. Current log-likelihood: -6694522.797
24. Current log-likelihood: -6694522.019
25. Current log-likelihood: -6694521.256
26. Current log-likelihood: -6694519.147
27. Current log-likelihood: -6694518.446
28. Current log-likelihood: -6694517.754
29. Current log-likelihood: -6694517.072
30. Current log-likelihood: -6694516.406
31. Current log-likelihood: -6694514.561
32. Current log-likelihood: -6694513.951
33. Current log-likelihood: -6694513.039
34. Current log-likelihood: -6694512.403
35. Current log-likelihood: -6694511.801
36. Current log-likelihood: -6694510.930
37. Current log-likelihood: -6694510.316
38. Current log-likelihood: -6694509.740
39. Current log-likelihood: -6694509.182
40. Current log-likelihood: -6694508.373
41. Current log-likelihood: -6694507.820
42. Current log-likelihood: -6694506.343
43. Current log-likelihood: -6694505.783
44. Current log-likelihood: -6694505.128
45. Current log-likelihood: -6694504.579
46. Current log-likelihood: -6694504.060
47. Current log-likelihood: -6694503.273
48. Current log-likelihood: -6694502.742
49. Current log-likelihood: -6694502.243
50. Current log-likelihood: -6694501.622
51. Current log-likelihood: -6694501.233
52. Current log-likelihood: -6694500.454
53. Current log-likelihood: -6694499.830
54. Current log-likelihood: -6694499.050
55. Current log-likelihood: -6694498.542
56. Current log-likelihood: -6694497.913
57. Current log-likelihood: -6694497.403
58. Current log-likelihood: -6694496.754
59. Current log-likelihood: -6694496.245
60. Current log-likelihood: -6694495.932
61. Current log-likelihood: -6694495.330
62. Current log-likelihood: -6694494.856
63. Current log-likelihood: -6694494.369
64. Current log-likelihood: -6694494.065
65. Current log-likelihood: -6694493.466
66. Current log-likelihood: -6694493.144
67. Current log-likelihood: -6694492.819
68. Current log-likelihood: -6694492.521
69. Current log-likelihood: -6694491.952
70. Current log-likelihood: -6694491.621
71. Current log-likelihood: -6694491.021
72. Current log-likelihood: -6694490.674
73. Current log-likelihood: -6694490.368
74. Current log-likelihood: -6694489.810
75. Current log-likelihood: -6694489.484
76. Current log-likelihood: -6694489.176
77. Current log-likelihood: -6694489.016
78. Current log-likelihood: -6694488.453
79. Current log-likelihood: -6694488.136
80. Current log-likelihood: -6694487.847
81. Current log-likelihood: -6694487.692
82. Current log-likelihood: -6694487.140
83. Current log-likelihood: -6694486.828
84. Current log-likelihood: -6694486.534
85. Current log-likelihood: -6694486.382
86. Current log-likelihood: -6694485.796
87. Current log-likelihood: -6694485.511
88. Current log-likelihood: -6694485.358
89. Current log-likelihood: -6694485.096
90. Current log-likelihood: -6694484.953
91. Current log-likelihood: -6694484.804
92. Current log-likelihood: -6694484.174
93. Current log-likelihood: -6694483.897
94. Current log-likelihood: -6694483.747
95. Current log-likelihood: -6694483.597
96. Current log-likelihood: -6694483.059
97. Current log-likelihood: -6694482.891
98. Current log-likelihood: -6694482.593
99. Current log-likelihood: -6694482.335
Optimal log-likelihood: -6694482.335
Site proportion and rates:  (0.261,0.010) (0.131,0.102) (0.084,0.255) (0.079,0.450) (0.072,0.704) (0.074,0.993) (0.094,1.430) (0.110,2.236) (0.077,3.835) (0.017,7.348)
Parameters optimization took 99 rounds (2685.271 sec)
Computing ML distances based on estimated model parameters... 37.867 sec
Computing BIONJ tree...
0.009 seconds
Log-likelihood of BIONJ tree: -6697516.067
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 8 parsimony trees... 83.568 second
Computing log-likelihood of 8 initial trees ... 60.546 seconds
Current best score: -6694482.335

Do NNI search on 10 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -6693649.857
Iteration 10 / LogL: -6693735.113 / Time: 9h:19m:10s
Finish initializing candidate tree set (6)
Current best tree score: -6693649.857 / CPU time: 1658.448
Number of iterations: 10
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 20 / LogL: -6693727.872 / Time: 9h:35m:6s
Iteration 30 / LogL: -6693716.686 / Time: 9h:50m:0s (4h:16m:57s left)
Iteration 40 / LogL: -6693861.751 / Time: 10h:5m:35s (3h:8m:32s left)
Iteration 50 / LogL: -6693721.712 / Time: 10h:21m:37s (2h:22m:9s left)
Log-likelihood cutoff on original alignment: -6693906.904
Iteration 60 / LogL: -6693775.658 / Time: 10h:37m:5s (1h:45m:39s left)
Iteration 70 / LogL: -6693707.214 / Time: 10h:51m:52s (1h:14m:56s left)
Iteration 80 / LogL: -6693692.263 / Time: 11h:6m:46s (0h:48m:18s left)
Iteration 90 / LogL: -6693666.366 / Time: 11h:21m:26s (0h:24m:16s left)
Iteration 100 / LogL: -6693782.998 / Time: 11h:36m:57s (0h:2m:8s left)
Log-likelihood cutoff on original alignment: -6693906.904
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.996
Total number of trees received: 0
Total number of trees sent: 0
Total number of NNI searches done by myself: 102
TREE SEARCH COMPLETED AFTER 102 ITERATIONS / Time: 11h:39m:19s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -6693649.857
2. Current log-likelihood: -6693649.606
3. Current log-likelihood: -6693649.392
4. Current log-likelihood: -6693648.996
5. Current log-likelihood: -6693648.779
6. Current log-likelihood: -6693648.566
7. Current log-likelihood: -6693648.194
8. Current log-likelihood: -6693647.928
9. Current log-likelihood: -6693647.719
10. Current log-likelihood: -6693647.427
11. Current log-likelihood: -6693647.226
12. Current log-likelihood: -6693647.060
13. Current log-likelihood: -6693646.903
14. Current log-likelihood: -6693646.536
15. Current log-likelihood: -6693646.310
16. Current log-likelihood: -6693646.129
17. Current log-likelihood: -6693645.976
18. Current log-likelihood: -6693645.830
19. Current log-likelihood: -6693645.509
20. Current log-likelihood: -6693645.344
21. Current log-likelihood: -6693645.149
22. Current log-likelihood: -6693644.990
23. Current log-likelihood: -6693644.847
24. Current log-likelihood: -6693644.614
25. Current log-likelihood: -6693644.458
26. Current log-likelihood: -6693644.323
27. Current log-likelihood: -6693644.194
28. Current log-likelihood: -6693643.892
29. Current log-likelihood: -6693643.745
30. Current log-likelihood: -6693643.572
31. Current log-likelihood: -6693643.430
32. Current log-likelihood: -6693643.307
33. Current log-likelihood: -6693643.187
34. Current log-likelihood: -6693642.869
35. Current log-likelihood: -6693642.689
36. Current log-likelihood: -6693642.550
37. Current log-likelihood: -6693642.433
38. Current log-likelihood: -6693642.319
39. Current log-likelihood: -6693642.169
40. Current log-likelihood: -6693642.046
41. Current log-likelihood: -6693641.701
42. Current log-likelihood: -6693641.573
43. Current log-likelihood: -6693641.459
44. Current log-likelihood: -6693641.311
45. Current log-likelihood: -6693641.193
46. Current log-likelihood: -6693641.090
47. Current log-likelihood: -6693640.993
48. Current log-likelihood: -6693640.855
49. Current log-likelihood: -6693640.750
50. Current log-likelihood: -6693640.653
51. Current log-likelihood: -6693640.364
52. Current log-likelihood: -6693640.218
53. Current log-likelihood: -6693640.107
54. Current log-likelihood: -6693640.014
55. Current log-likelihood: -6693639.924
56. Current log-likelihood: -6693639.799
57. Current log-likelihood: -6693639.701
58. Current log-likelihood: -6693639.615
59. Current log-likelihood: -6693639.534
60. Current log-likelihood: -6693639.285
61. Current log-likelihood: -6693639.190
62. Current log-likelihood: -6693639.067
63. Current log-likelihood: -6693638.973
64. Current log-likelihood: -6693638.892
65. Current log-likelihood: -6693638.815
66. Current log-likelihood: -6693638.581
67. Current log-likelihood: -6693638.491
68. Current log-likelihood: -6693638.411
69. Current log-likelihood: -6693638.297
70. Current log-likelihood: -6693638.210
71. Current log-likelihood: -6693638.135
72. Current log-likelihood: -6693638.065
73. Current log-likelihood: -6693637.972
74. Current log-likelihood: -6693637.892
75. Current log-likelihood: -6693637.819
76. Current log-likelihood: -6693637.767
77. Current log-likelihood: -6693637.540
78. Current log-likelihood: -6693637.463
79. Current log-likelihood: -6693637.408
80. Current log-likelihood: -6693637.300
81. Current log-likelihood: -6693637.226
82. Current log-likelihood: -6693637.171
83. Current log-likelihood: -6693637.106
84. Current log-likelihood: -6693637.024
85. Current log-likelihood: -6693636.950
86. Current log-likelihood: -6693636.901
87. Current log-likelihood: -6693636.853
88. Current log-likelihood: -6693636.628
89. Current log-likelihood: -6693636.554
90. Current log-likelihood: -6693636.504
91. Current log-likelihood: -6693636.422
92. Current log-likelihood: -6693636.351
93. Current log-likelihood: -6693636.304
94. Current log-likelihood: -6693636.258
95. Current log-likelihood: -6693636.177
96. Current log-likelihood: -6693636.113
97. Current log-likelihood: -6693636.067
98. Current log-likelihood: -6693636.022
99. Current log-likelihood: -6693635.831
Optimal log-likelihood: -6693635.831
Site proportion and rates:  (0.264,0.010) (0.138,0.107) (0.092,0.284) (0.078,0.500) (0.080,0.783) (0.071,1.093) (0.105,1.604) (0.098,2.546) (0.062,4.263) (0.011,8.223)
Parameters optimization took 99 rounds (1541.645 sec)
BEST SCORE FOUND : -6693635.831
Creating bootstrap support values...
Split supports printed to NEXUS file 69taxa.splits.nex
Total tree length: 18.407

Total number of iterations: 102
CPU time used for tree search: 610425.107 sec (169h:33m:45s)
Wall-clock time used for tree search: 10065.954 sec (2h:47m:45s)
Total CPU time used: 2528987.144 sec (702h:29m:47s)
Total wall-clock time used: 43502.132 sec (12h:5m:2s)

Computing bootstrap consensus tree...
Reading input file 69taxa.splits.nex...
114 taxa and 260 splits.
Consensus tree written to 69taxa.contree
Reading input trees file 69taxa.contree
Log-likelihood of consensus tree: -6693634.646

Analysis results written to: 
  IQ-TREE report:                69taxa.iqtree
  Maximum-likelihood tree:       69taxa.treefile
  Likelihood distances:          69taxa.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          69taxa.splits.nex
  Consensus tree:                69taxa.contree
  Screen log file:               69taxa.log

Date and Time: Sat Dec  4 21:19:23 2021
